Publications

2025

Sheng, Jennifer; Zhang, Tongli 2025. Advancing drug development with "Fit-for-Purpose" modeling informed approaches. Journal of pharmacokinetics and pharmacodynamics, 52 5, 52

Androulakis, Ioannis P; Cheng, Limei; Cho, Carolyn R; Zhang, Tongli 2025. Leveraging large language models to compare perspectives on integrating QSP and AI/ML. Journal of pharmacokinetics and pharmacodynamics, 52 3, 29

Fostvedt, Luke; Zhou, Jiawei; Kondic, Anna G; Androulakis, Ioannis P; Zhang, Tongli; Pryor, Meghan; Zhuang, Luning; Elassaiss-Schaap, Jeroen; Chan, Phyllis; Moore, Helen; Avedissian, Sean N; Tigh, Jeremy; Goteti, Kosalaram; Thanneer, Neelima; Su, Jing; Ait-Oudhia, Sihem 2025. Stronger together: a cross-SIG perspective on improving drug development. Journal of pharmacokinetics and pharmacodynamics, 52 1, 14

Zhang, Tongli 2025. Integrating QSP and ML to Facilitate Drug Development and Personalized Medicine. Handbook of experimental pharmacology, 289 , 165-185

2024

Parker, Christopher; Nelson, Erik; Zhang, Tongli 2024. Applying neural ordinary differential equations for analysis of hormone dynamics in Trier Social Stress Tests. Frontiers in genetics, 15 , 1375468

2022

Parker, Christopher; Nelson, Erik; Zhang, Tongli 2022. VeVaPy, a Python Platform for Efficient Verification and Validation of Systems Biology Models with Demonstrations Using Hypothalamic-Pituitary-Adrenal Axis Models. Entropy (Basel, Switzerland), 24 12,

Zhang, Tongli; Cho, Carolyn R; Bonate, Peter L 2022. Perspectives on training quantitative systems pharmacologists. CPT: pharmacometrics & systems pharmacology, 11 6, 669-672

Tanaka, Tomoyuki U; Zhang, Tongli 2022. SWAP, SWITCH, and STABILIZE: Mechanisms of Kinetochore-Microtubule Error Correction. Cells, 11 9,

Zhang, Tongli; Androulakis, Ioannis P; Bonate, Peter; Cheng, Limei; Helikar, Tomáš; Parikh, Jaimit; Rackauckas, Christopher; Subramanian, Kalyanasundaram; Cho, Carolyn R 2022. Two heads are better than one: current landscape of integrating QSP and machine learning : An ISoP QSP SIG white paper by the working group on the integration of quantitative systems pharmacology and machine learning. Journal of pharmacokinetics and pharmacodynamics, 49 1, 5-18

Zhang, Tongli; Tyson, John J 2022. Understanding virtual patients efficiently and rigorously by combining machine learning with dynamical modelling. Journal of pharmacokinetics and pharmacodynamics, 49 1, 117-131