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Photo of  Emily R. Miraldi, PhD

Emily R. Miraldi, PhD

Assistant Professor-Affiliate

Pediatrics | College of Medicine

Education/Credentials
  • BA: Oberlin College
  • PhD: Massachusetts Institute of Technology
  • PostDoc: New York University, New York School of Medicine, Flatiron Institute (Simons Foundation)
Contact Information
Research Interests

Systems biology; computational immunology; immuno-engineering; network inference

Peer Reviewed Publications

Karwacz, K, Miraldi, ER, Pokrovskii, M, Madi, A, Yosef, N, Wortman, I, Chen, X, Watters, A, Carriero, N, Awasthi, A, Regev, A, Bonneau, R, Littman, DR, Kuchroo, VK. 2017. Critical role of IRF1 and BATF in preparing the chromatin landscape during Tr1 differentiation. Nature Immunology. , ,

Raviram, R, Rocha, PD, Mueller, CL, Miraldi, ER, Fu, Y, Swanzey, E, Badri, S, Proudhon, C, Snetkova, V, Bonneau, R, Skok, JA. 2016. A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments. PLoS Computational Biology. , 12 3, e1004780

Kurtz, ZD*, Mueller, CL*, Miraldi, ER*, Littman, DR, Blaser, MJ, Bonneau, R. 2015. Sparse and compositionally robust inference of microbial ecological networks. PLoS Computational Biology. , 11 5, e1004226

Miraldi, ER, Sharfi, H, Friedline, RH, Johnson, H, Zhang T, Lau, K, Ko, HJ, Curran, TG, Haigis, KM, Yaffe, YB, Bonneau, R, Lauffenburger, DA, Kahn, BB, Kim, J, Neel, BG, Saghatelian, A, White, FM. 2013. Molecular network analysis of protein-tyrosine phosphorylation and altered lipid metabolism in liver-specific PTP1b deletion mice. Integrative Biology. , 5 7, 940

Huang, PH, Miraldi, ER, Xu, AM, Kundukulam, VA, Del Rosario, AM, Flynn, RA, Cavenee, WK, Furnari, FB, White, FM. 2010. Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth. Molecular BioSystems, 6 7, 1227