- BA: Oberlin College
- PhD: Massachusetts Institute of Technology
- PostDoc: New York University, New York School of Medicine, Flatiron Institute (Simons Foundation)
- Childrens Hospital Bldg R
- Office 513-636-4200
- Email miraldey@ucmail.uc.edu
Systems biology; computational immunology; immuno-engineering; network inference
Peer Reviewed Publications
Karwacz, K, Miraldi, ER, Pokrovskii, M, Madi, A, Yosef, N, Wortman, I, Chen, X, Watters, A, Carriero, N, Awasthi, A, Regev, A, Bonneau, R, Littman, DR, Kuchroo, VK. 2017. Critical role of IRF1 and BATF in preparing the chromatin landscape during Tr1 differentiation. Nature Immunology. , ,
Raviram, R, Rocha, PD, Mueller, CL, Miraldi, ER, Fu, Y, Swanzey, E, Badri, S, Proudhon, C, Snetkova, V, Bonneau, R, Skok, JA. 2016. A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments. PLoS Computational Biology. , 12 3, e1004780
Kurtz, ZD*, Mueller, CL*, Miraldi, ER*, Littman, DR, Blaser, MJ, Bonneau, R. 2015. Sparse and compositionally robust inference of microbial ecological networks. PLoS Computational Biology. , 11 5, e1004226
Miraldi, ER, Sharfi, H, Friedline, RH, Johnson, H, Zhang T, Lau, K, Ko, HJ, Curran, TG, Haigis, KM, Yaffe, YB, Bonneau, R, Lauffenburger, DA, Kahn, BB, Kim, J, Neel, BG, Saghatelian, A, White, FM. 2013. Molecular network analysis of protein-tyrosine phosphorylation and altered lipid metabolism in liver-specific PTP1b deletion mice. Integrative Biology. , 5 7, 940
Huang, PH, Miraldi, ER, Xu, AM, Kundukulam, VA, Del Rosario, AM, Flynn, RA, Cavenee, WK, Furnari, FB, White, FM. 2010. Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth. Molecular BioSystems, 6 7, 1227